R/data_autm.R

In genomaths/GenomAutomorphism: Compute the automorphisms between DNA's Abelian group representations

## Copyright (C) 2021 Robersy Sanchez <https://genomaths.com/>
## Author: Robersy Sanchez This file is part of the R package
## 'GenomAutomorphism'.  'GenomAutomorphism' is a free
## software: you can redistribute it and/or modify it under the
## terms of the GNU General Public License as published by the Free
## Software Foundation, either version 3 of the License, or (at
## your option) any later version.  This program is distributed in
## the hope that it will be useful, but WITHOUT ANY WARRANTY;
## without even the implied warranty of MERCHANTABILITY or FITNESS
## FOR A PARTICULAR PURPOSE. See the GNU General Public License for
## more details.  You should have received a copy of the GNU
## General Public License along with this program; if not, see
## <http://www.gnu.org/licenses/>.

#' Automorphisms between DNA Sequences from two COVID-19 genomes
#'
#' This is a [AutomorphismList] object carrying a list of pairwise
#' automorphisms between the SARS coronavirus GZ02 (GenBank: AY390556.1:
#' 265-13398_13398-21485) and Bat SARS-like coronavirus isolate bat-SL-CoVZC45
#' (GenBank: MG772933.1:265-1345513455-21542), nonstructural_polyprotein. The
#' pairwise DNA sequence alignment is available in the dataset named
#' [covid_aln] and the automorphisms were estimated with function
#' [autZ64].
#' 
#' The alignment of these DNA sequences is available at:
#' \url{https://github.com/genomaths/seqalignments/raw/master/COVID-19} in 
#' the fasta file 
#' 'AY390556.1_265-13398_13398-21485_RNA-POL_SARS_COVI_GZ02.fas'
#' @format [AutomorphismList] class object.
#' @usage 
#' data("autm", package = "GenomAutomorphism")
#' @examples 
#' data("autm", package = "GenomAutomorphism")
#' autm
#' 
"autm"