GenomAutomorphism: GenomAutomorphism: An R package to compute the automorphisms...

In genomaths/GenomAutomorphism: Compute the automorphisms between DNA's Abelian group representations

GenomAutomorphism: An R package to compute the automorphisms between DNA sequences represented as elements from an Abelian group.

Description

This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group as described in reference (1). In a general scenario, whole chromosomes or genomic regions from a population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments (MSA) of length N as a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order.

Author(s)

Maintainer: Robersy Sanchez [e-mail] (ORCID)

See Also

Useful links:

• https://github.com/genomaths/GenomAutomorphism

• Report bugs at https://github.com/genomaths/GenomAutomorphism/issues

genomaths/GenomAutomorphism documentation built on Dec. 12, 2024, 2:12 p.m.