Files in graeberlab-ucla/glab.library
Data Analysis Functions
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
DESCRIPTION-1
NAMESPACE
R/PCA_from_file.R
R/PLSR_from_file.R
R/PLSR_from_file_and_predict_second_dataset.R
R/calc_iCNA_breakpoints.R
R/calculate_signature_scores.R
R/gsea_squared.R
R/intersect_all.R
R/intersect_doPCA_from_file_and_project_second_dataset.R
R/ladder plot with ks p-value.R
R/ladder.plot.with.transparent.lines.R
R/plot_cca_loadings.R
R/plot_pca.R
R/plot_pca_gradient_fill.R
R/plot_pca_gradient_fill_do_not_include_samples_with_missing_values.R
R/plot_pca_gradient_fill_missingGrey90.R
R/plot_pca_gradient_fill_repel.R
R/plot_pca_paint_crispr.R
R/plot_pca_paint_crispr_repel.R
R/plot_pca_paint_gene.R
R/plot_pca_paint_gene_on_crispr.R
R/plot_pca_paint_gene_repel.R
R/plot_pca_paint_vector.R
R/plot_pca_projection.R
R/plot_pca_projection_labeloptions.R
R/plot_pca_repel.R
R/plot_pls.R
R/plot_pls_varimax.R
R/plot_varimax.R
R/plot_varimax_gradient_fill.R
R/plot_varimax_gradient_fill_missingGrey90.R
R/plot_varimax_paint_gene.R
R/plot_varimax_shape.R
R/plot_varimax_shape_size.R
R/run.enrichR.R
R/run_cca.R
R/spinning_3d_pca_link.R
R/varimax_from_file.R
README.Rmd
README.md
data/TOIL protein coding genelist GENCODEv23.txt
data/TOIL protein coding genelist union.txt
data/graeber roundtable 20220914 - consensus protein coding gene list.pptx
development/metabolomics_pipeline/Maven_Analysis.R
development/metabolomics_pipeline/Medium_analysis.R
development/metabolomics_pipeline/correct_iso.R
development/metabolomics_pipeline/make_MID-development.R
development/metabolomics_pipeline/make_MID.R
development/metabolomics_pipeline/make_MID_uncorrected.R
development/metabolomics_pipeline/make_heatmap.R
development/metabolomics_pipeline/tracefinder_analysis.R
glab.library.Rproj
man/PCA_from_file.Rd
man/PLSR_from_file.Rd
man/PLSR_from_file_and_predict_second_dataset.Rd
man/calc.iCNA.breakpoints.Rd
man/calculate_signature_scores.Rd
man/gsea_squared.Rd
man/intersect_all.Rd
man/intersect_doPCA_from_file_and_project_second_dataset.Rd
man/ladder.plot.Rd
man/ladder.plot.with.transparent.lines.Rd
man/plot_cca_loadings.Rd
man/plot_pca.Rd
man/plot_pca_gradient_fill.Rd
man/plot_pca_gradient_fill_missingGrey90.Rd
man/plot_pca_gradient_fill_repel.Rd
man/plot_pca_paint_crispr.Rd
man/plot_pca_paint_crispr_repel.Rd
man/plot_pca_paint_gene.Rd
man/plot_pca_paint_gene_on_crispr.Rd
man/plot_pca_paint_gene_repel.Rd
man/plot_pca_paint_vector.Rd
man/plot_pca_projection.Rd
man/plot_pca_projection_labeloptions.Rd
man/plot_pca_repel.Rd
man/plot_pls.Rd
man/plot_pls_varimax.Rd
man/plot_varimax.Rd
man/plot_varimax_gradient_fill.Rd
man/plot_varimax_paint_gene.Rd
man/plot_varimax_shape.Rd
man/plot_varimax_shape_size.Rd
man/run.enrichR.Rd
man/run_cca.Rd
man/spinning_3d_pca_link.Rd
man/varimax_from_file.Rd
perl/quartile_norm.pl
vignettes/.gitignore
vignettes/PCA_tutorial/Beltran_2016_rsem_genes_upper_norm_counts_coding_log2.txt
vignettes/PCA_tutorial/PCA_tutorial.Rmd
vignettes/PCA_tutorial/human.info.rsem.expression.txt
vignettes/Projection_PCA_tutorial/HiSeqV2_KICH.txt
vignettes/Projection_PCA_tutorial/HiSeqV2_MESO.txt
vignettes/Projection_PCA_tutorial/Projection_PCA.Rmd
vignettes/Projection_PCA_tutorial/group_annotation.txt
vignettes/entropy.R
vignettes/ggplot_tutorial/ggplot_tutorial.Rmd
vignettes/ggplot_tutorial/ggplot_tutorial.pdf
vignettes/gliomaPDOX_sample_selection.R
vignettes/gsea_merge.R
vignettes/ladder plot 2color.R
vignettes/limma_permutation_testing_v2.R
vignettes/plottly 3D.R
vignettes/rank_rank_contour.R
vignettes/rank_rank_facet_plots/example_rank_rank_data.txt
vignettes/rank_rank_facet_plots/example_rank_rank_facet_plot.png
vignettes/rank_rank_facet_plots/rank rank facet plots.R
vignettes/run.enrichR.R
