Files in grafab/gsrc
Genome Structure Rearrangement Calling in Genomes with High Synteny
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/filter.R
R/plot.R
R/preprocess.R
R/process.R
R/raw.R
R/synteny.R
R/tools.R
brassicaCNV.Rproj
gsrc.Rproj
inst/CITATION
man/call_geno.Rd
man/check_raw.Rd
man/cnv.Rd
man/filt_samp.Rd
man/filt_snps.Rd
man/filter_cnv.Rd
man/find_blocks.Rd
man/find_peak.Rd
man/geno_baf_rratio.Rd
man/intens_theta.Rd
man/interpol.Rd
man/plot_cnv.Rd
man/plot_global.Rd
man/plot_gsr.Rd
man/plot_raw_snp.Rd
man/plot_samp.Rd
man/plot_trans_locations.Rd
man/read_intensities.Rd
man/read_sample_sheets.Rd
man/remove_suffix.Rd
man/rename_samples.Rd
man/require_package.Rd
man/segm.Rd
man/split_sb.Rd
man/synteny_info.Rd
man/trans_location.Rd
tests/testthat.R
tests/testthat/read_intensities.R
tests/testthat/test_check_raw.R
tests/testthat/test_cnv.R
tests/testthat/test_filt_samp.R
tests/testthat/test_filt_snps.R
tests/testthat/test_geno_rratio_baf.R
tests/testthat/test_intens_theta.R
tests/testthat/test_segm.R
vignettes/.build.timestamp
vignettes/brassica_synteny_filtered.rda
vignettes/cotton_synteny_filtered.rda
vignettes/introduction.R
vignettes/introduction.Rmd
vignettes/introduction_cache/html/__packages
vignettes/introduction_cache/html/unnamed-chunk-31_7d400f8476971a879c0ec0e5feb79517.RData
vignettes/introduction_cache/html/unnamed-chunk-31_7d400f8476971a879c0ec0e5feb79517.rdb
vignettes/introduction_cache/html/unnamed-chunk-31_7d400f8476971a879c0ec0e5feb79517.rdx
vignettes/introduction_files/figure-html/unnamed-chunk-12-1.png
vignettes/introduction_files/figure-html/unnamed-chunk-14-1.png
vignettes/introduction_files/figure-html/unnamed-chunk-17-1.png
vignettes/introduction_files/figure-html/unnamed-chunk-17-2.png
vignettes/introduction_files/figure-html/unnamed-chunk-20-1.png
vignettes/introduction_files/figure-html/unnamed-chunk-20-2.png
vignettes/introduction_files/figure-html/unnamed-chunk-20-3.png
vignettes/introduction_files/figure-html/unnamed-chunk-25-1.png
vignettes/introduction_files/figure-html/unnamed-chunk-28-1.png
vignettes/introduction_files/figure-html/unnamed-chunk-29-1.png
vignettes/introduction_files/figure-html/unnamed-chunk-30-1.png
vignettes/synteny.Rmd
