plot_raw_snp: Plot raw SNP
In grafab/gsrc: Genome Structure Rearrangement Calling in Genomes with High Synteny
Description
Usage
Arguments
Examples
Description
Plots raw data for specified SNP.
Usage
1
2
plot_raw_snp(raw, n = 1L, transf = "log", pn = 2, theta = "atan2",
nan = 0.5)
Arguments
raw
Raw data object.
n
Integer, which SNP should be plotted.
transf
Method for transformation of the raw values. "none", "log" and "fourth-root" are implemented.
pn
Numeric, p-norm for the intensity calculation.
theta
Method for calculation of theta. Currently only "atan2" is implemented.
nan
Numveric to replace NaN for ballele computation (division by zero).
Examples
1
2
3
4
if(require(brassicaData)){
data("raw_napus", package = "brassicaData", envir = environment())
plot_raw_snp(raw_napus)
}
grafab/gsrc documentation built on May 17, 2019, 8:18 a.m.
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Description Usage Arguments Examples
Description
Plots raw data for specified SNP.
Usage
1 2 | plot_raw_snp(raw, n = 1L, transf = "log", pn = 2, theta = "atan2",
nan = 0.5)
|
Arguments
raw |
Raw data object. |
n |
Integer, which SNP should be plotted. |
transf |
Method for transformation of the raw values. "none", "log" and "fourth-root" are implemented. |
pn |
Numeric, p-norm for the intensity calculation. |
theta |
Method for calculation of theta. Currently only "atan2" is implemented. |
nan |
Numveric to replace NaN for ballele computation (division by zero). |
Examples
1 2 3 4 | if(require(brassicaData)){
data("raw_napus", package = "brassicaData", envir = environment())
plot_raw_snp(raw_napus)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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