segm: Segmentation of R ratio values
In grafab/gsrc: Genome Structure Rearrangement Calling in Genomes with High Synteny

Description Usage Arguments Value Examples

Wrapper for DNAcopy::segment. Other methods (e.g. sliding window approaches) might be added in a future version.

segm(dat)

dat

List object, containing at least two matrices "baf" and "rratio" and two vectors "chr" and "pos".

norm_data object including a CNA object.

## Not run: 
if(require(brassicaData)){
data("raw_napus", package = "brassicaData", envir = environment())
dat <- intens_theta(raw_napus)
dat <- remove_suffix(dat, "_Grn")
dat <- geno_baf_rratio(dat, delthresh = 11)
dat <- segm(dat)
}

## End(Not run)