rename_samples: Rename sample names
In grafab/gsrc: Genome Structure Rearrangement Calling in Genomes with High Synteny

Description Usage Arguments Value Examples

Rename sample names

rename_samples(dat, ...)

## S3 method for class 'raw_data'
rename_samples(dat, samples, suffix = NULL, ...)

## S3 method for class 'norm_data'
rename_samples(dat, samples, ...)

`dat`	List object, containing at least two matrices "intensity" and "theta". Or matrix with raw data.
`...`	Placeholder for generic function.
`samples`	Matrix or data.frame with two columns: 1. (prefix of) colnames of dat and 2. meaningful sample name.
`suffix`	Vector of two characters (e.g. c("Grn.idat", "Red.idat")) describing which suffix should be appended to the sample name.

List with two matrices "intensity" (signal intensities) and "theta" (genotype value).

if(require(brassicaData)){
data(raw_napus, package = "brassicaData")
samples <- read_sample_sheets(files = list.files(system.file("extdata",
package = "brassicaData"), full.names = TRUE, pattern = "csv"))
raw_napus <- rename_samples(raw_napus, samples = samples[,2:1], suffix = c("_Grn", "_Red"))
}