geno_baf_rratio: Genotype with kmeans using three clusters
In grafab/gsrc: Genome Structure Rearrangement Calling in Genomes with High Synteny

Description Usage Arguments Value Examples

Genotype with kmeans using three clusters

1	geno_baf_rratio(dat, delthresh = 0.7, drop = FALSE, corr = FALSE)

`dat`	List object, containing at least two matrices "intensity" and "theta". Or matrix with raw data.
`delthresh`	Numeric between 0 and 1. Intensity threshold for deletions.
`drop`	Logical, if TRUE theta and intensity values are removed to save memory.
`corr`	Logical, if TRUE all sample medians are corrected to 0.

Genotypes

if(require(brassicaData)){
data("raw_napus", package = "brassicaData", envir = environment())

dat <- intens_theta(raw_napus)
dat <- remove_suffix(dat, "_Grn")
dat <- geno_baf_rratio(dat, delthresh = 11)
}