call_geno: Genotype with kmeans using three clusters

Description Usage Arguments Value

View source: R/process.R

Description

Genotype with kmeans using three clusters

Usage

1
call_geno(theta, intensity, clusterm = c(0.2, 0.5, 0.8), delthresh = NULL)

Arguments

theta

Vector with theta values.

intensity

Vector with intensity values.

clusterm

Vector containing the cluster means.

delthresh

Threshold for intensity based deletion calling.

Value

List containing genotypes, b-allele frequencies and R ratios.


grafab/gsrc documentation built on May 14, 2017, 3 p.m.