Creates synteny blocks from homeolog positions. See the vignette for more information.
1 2 | find_blocks(df, eps = 2000000L, minPts = 100L, minLength = 1000000L,
maxLength = 10000000L, gap = 0L)
|
df |
Data frame with positions. |
eps |
Numeric, eps parameter for dbscan |
minPts |
Integer, minPTS parameter for dbscan. |
minLength |
Integer, minimal block length. Blocks below this threshold will be filtered out. |
maxLength |
Integer, maximal block length. Blocks above this threshold will be split up. |
gap |
Numeric, gap size between chromosomes. |
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