check_raw: Check raw data
In grafab/gsrc: Genome Structure Rearrangement Calling in Genomes with High Synteny

Description Usage Arguments Value Examples

Before preprocessing it is advised to check the data for failed samples. This function allows to visualize the signals and return sample indices of failed samples.

1	check_raw(raw, plot = TRUE, thresh = 0, ...)

`raw`	Matrix with raw data. Two consecutive columns per sample. The order (e.g. green,red) must be consistent for all samples.
`plot`	Logical. If TRUE data will be plotted.
`thresh`	Threshold for filtering.
`...`	arguments are forwarded to `hist()`.

Vector containing Samples below threshold.

if(require(brassicaData)){
data("raw_napus", package = "brassicaData", envir = environment())
to_filter <- check_raw(raw_napus, thresh = 28000, breaks = 20)
}