Man pages for grafab/gsrc
Genome Structure Rearrangement Calling in Genomes with High Synteny
| call_geno | Genotype with kmeans using three clusters |
| check_raw | Check raw data |
| cnv | Copy Number Variation |
| filter_cnv | Filter Copy number variations |
| filt_samp | Filter Samples |
| filt_snps | Filter SNPs |
| find_blocks | Find Synteny Blocks |
| find_peak | Find peaks |
| geno_baf_rratio | Genotype with kmeans using three clusters |
| intens_theta | Preprocess raw values and calculate Intensity and Theta... |
| interpol | Interpolate cluster means |
| plot_cnv | Plot Copy Number Variations |
| plot_global | Plot all chromosomes of a population |
| plot_gsr | Plot all chromosomes of a sample |
| plot_raw_snp | Plot raw SNP |
| plot_samp | Plot all chromosomes of a sample |
| plot_trans_locations | Plot translocations |
| read_intensities | Read multiple idat files. |
| read_sample_sheets | Read sample sheet(s) |
| remove_suffix | Remove suffix from sample names |
| rename_samples | Rename sample names |
| require_package | Require package wrapper |
| segm | Segmentation of R ratio values |
| split_sb | Split synteny blocks |
| synteny_info | Class for synteny information |
| trans_location | Find translocations |
