grimbough/IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

Getting started

Package details

AuthorMike Smith [aut, cre]
Bioconductor views DataImport QualityControl Sequencing
MaintainerMike Smith <[email protected]>
LicenseMIT + file LICENSE
Version2.5.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("grimbough/IONiseR")
grimbough/IONiseR documentation built on May 3, 2018, 7:15 p.m.