readFast5Log: Read the log entry from a single fast5 file

Description Usage Arguments Value Examples

View source: R/fast5Readers.R

Description

Basecalling procedures performed on fast5 files generally leave a log file entry recording how far through the pipeline the file proceeded. This function will extract this information as a single string. It can be printed in a more readable format using the cat function.

Usage

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Arguments

file

Character vector of fast5 file to be read.

Value

Character vector containing the log information. NULL if no log is found.

Examples

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fast5file <- system.file('extdata', 'example.fast5', package = "IONiseR")
log <- readFast5Log(fast5file)
cat(log)

grimbough/IONiseR documentation built on Sept. 24, 2020, 11:32 a.m.