plotEventRate: Plot the mean rate at which events occur

In grimbough/IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data

Description

For each read, the ratio between the number of events comprising the read and the time spent in the pore is calculated. This is then plotted against the time the read entered the pore, allow us to assess whether the rate at which events occur changes during the experiment run time.

Usage

plotEventRate(summaryData)

Arguments

summaryData

Object of class Fast5Summary.

Value

Returns an object of class gg representing the plot.

Examples

if( require(minionSummaryData) ) {
   data(s.typhi.rep2, package = 'minionSummaryData')
   plotEventRate( s.typhi.rep2 )
}

grimbough/IONiseR documentation built on Sept. 24, 2020, 11:32 a.m.