plotReadCategoryQuals: Visualise the mean base quality of each read
In grimbough/IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data
Description
Usage
Arguments
Value
Examples
View source: R/plotting_summaryStats.R
Description
Generates a box plot showing the mean base quality for each read, broken down into the three categories of read type that can be found in a fast5 file.
Usage
1
plotReadCategoryQuals(summaryData)
Arguments
summaryData
Object of class Fast5Summary.
Value
Returns an object of class gg representing the plot.
Examples
1
2
3
4
if( require(minionSummaryData) ) {
data(s.typhi.rep2, package = 'minionSummaryData')
plotReadCategoryQuals( s.typhi.rep2 )
}
grimbough/IONiseR documentation built on Sept. 24, 2020, 11:32 a.m.
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Description Usage Arguments Value Examples
View source: R/plotting_summaryStats.R
Description
Generates a box plot showing the mean base quality for each read, broken down into the three categories of read type that can be found in a fast5 file.
Usage
1 | plotReadCategoryQuals(summaryData)
|
Arguments
summaryData |
Object of class Fast5Summary. |
Value
Returns an object of class gg representing the plot.
Examples
1 2 3 4 | if( require(minionSummaryData) ) {
data(s.typhi.rep2, package = 'minionSummaryData')
plotReadCategoryQuals( s.typhi.rep2 )
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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