plotKmerFrequencyCorrelation: Display correlation between pentemer proportions in two time...
In grimbough/IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data

Description Usage Arguments Value Examples

Plots

1 2	plotKmerFrequencyCorrelation(summaryData, kmerLength = 5, groupedMinutes = 10, only2D = TRUE)

`summaryData`	Object of class Fast5Summary.
`kmerLength`	Specifies the length of kmers to compare. Defaults to 5 given the current pentamer reading nature of the nanopores.
`groupedMinutes`	Defines how many minutes each grouping of reads spans.
`only2D`	Logical. If TRUE kmers are computed for only full 2D reads. If FALSE 2D reads are ignored and all available template and complement strands are used.

Returns an object of class gg representing the plot.

if( require(minionSummaryData) ) {
   data(s.typhi.rep3, package = 'minionSummaryData')
   plotKmerFrequencyCorrelation( s.typhi.rep3, only2D = FALSE )
}