API for grimbough/IONiseR
Quality Assessment Tools for Oxford Nanopore MinION data

Global functions
.H5Fopen_tryCatch Source code
.channelToXY Source code
.checkOpening Source code
.chooseStrand Source code
.circleFun Source code
.fast5status Source code
.fast5version Source code
.findAnalysisNumber Source code
.get2D Source code
.getAligned Source code
.getBaseCalled Source code
.getBaseCalledSummary Source code
.getEvents Source code
.getEventsSummary Source code
.getFastqString Source code
.getRawSignal Source code
.getRawStartDuration Source code
.getRawSummary Source code
.getReadChannelMux Source code
.getReadChannelMux2 Source code
.getReadNumber Source code
.getRunID Source code
.getSamplingRate Source code
.getStartTime Source code
.groupExistsObj Source code
.groupExistsString Source code
.idFromFASTQ Source code
.matchRecords Source code
.muxToXY Source code
.passFailStatus Source code
.processFastq Source code
.processFastqVec Source code
.processStrandSpecifier Source code
.readAttribute Source code
.readtypeFromFASTQ Source code
.strandExistence Source code
Fast5Summary-class Man page
IONiseR Man page
IONiseR-package Man page
[,Fast5Summary,ANY,ANY,ANY-method Man page
baseCalled Man page
baseCalled,Fast5Summary-method Man page
channelActivityPlot Man page Source code
channelHeatmap Man page Source code
eventData Man page
eventData,Fast5Summary-method Man page
fast5toFastq Man page Source code
fastq Man page
fastq,Fast5Summary-method Man page
fastq2D Man page
fastq2D,Fast5Summary-method Man page
fastqComplement Man page
fastqComplement,Fast5Summary-method Man page
fastqTemplate Man page
fastqTemplate,Fast5Summary-method Man page
layoutPlot Man page Source code
length,Fast5Summary-method Man page
muxHeatmap Man page Source code
plot2DYield Source code
plotActiveChannels Man page Source code
plotBaseProductionRate Man page Source code
plotCurrentByTime Man page Source code
plotEventRate Man page Source code
plotKmerFrequencyCorrelation Man page Source code
plotReadAccumulation Man page Source code
plotReadCategoryCounts Man page Source code
plotReadCategoryQuals Man page Source code
plotReadTypeProduction Man page Source code
readFast5Log Man page Source code
readFast5Summary Man page Source code
readFast5Summary.mc Source code
readInfo Man page
readInfo,Fast5Summary-method Man page
grimbough/IONiseR documentation built on May 3, 2019, 2:58 p.m.