API for grimbough/IONiseR
Quality Assessment Tools for Oxford Nanopore MinION data

Global functions
Fast5Summary-class Man page
H5Fopen_tryCatch Source code
IONiseR Man page
IONiseR-package Man page
[,Fast5Summary,ANY,ANY,ANY-method Man page
baseCalled Man page
baseCalled,Fast5Summary-method Man page
channelActivityPlot Man page Source code
channelHeatmap Man page Source code
channelToXY Source code
checkOpening Source code
chooseStrand Source code
circleFun Source code
dFromFASTQ Source code
eventData Man page
eventData,Fast5Summary-method Man page
fast5status Source code
fast5toFastq Man page Source code
fast5version Source code
fastq Man page
fastq,Fast5Summary-method Man page
fastq2D Man page
fastq2D,Fast5Summary-method Man page
fastqComplement Man page
fastqComplement,Fast5Summary-method Man page
fastqTemplate Man page
fastqTemplate,Fast5Summary-method Man page
findAnalysisNumber Source code
get2D Source code
getAligned Source code
getBaseCalled Source code
getBaseCalledSummary Source code
getEvents Source code
getEventsSummary Source code
getFastqString Source code
getRawSignal Source code
getRawStartDuration Source code
getRawSummary Source code
getReadChannelMux Source code
getReadChannelMux2 Source code
getReadNumber Source code
getRunID Source code
getSamplingRate Source code
getStartTime Source code
groupExistsObj Source code
groupExistsString Source code
layoutPlot Man page Source code
length,Fast5Summary-method Man page
matchRecords Source code
muxHeatmap Man page Source code
muxToXY Source code
passFailStatus Source code
plot2DYield Source code
plotActiveChannels Man page Source code
plotBaseProductionRate Man page Source code
plotCurrentByTime Man page Source code
plotEventRate Man page Source code
plotKmerFrequencyCorrelation Man page Source code
plotReadAccumulation Man page Source code
plotReadCategoryCounts Man page Source code
plotReadCategoryQuals Man page Source code
plotReadTypeProduction Man page Source code
processFastq Source code
processFastqVec Source code
processStrandSpecifier Source code
readAttribute Source code
readFast5Log Man page Source code
readFast5Summary Man page Source code
readFast5Summary.mc Source code
readInfo Man page
readInfo,Fast5Summary-method Man page
readtypeFromFASTQ Source code
strandExistence Source code
grimbough/IONiseR documentation built on May 3, 2018, 7:15 p.m.