API for grimbough/IONiseR
Quality Assessment Tools for Oxford Nanopore MinION data
| Global functions | |
|---|---|
| .H5Fopen_tryCatch | Source code |
| .channelToXY | Source code |
| .checkOpening | Source code |
| .chooseStrand | Source code |
| .circleFun | Source code |
| .fast5status | Source code |
| .fast5version | Source code |
| .findAnalysisNumber | Source code |
| .get2D | Source code |
| .getAligned | Source code |
| .getBaseCalled | Source code |
| .getBaseCalledSummary | Source code |
| .getEvents | Source code |
| .getEventsSummary | Source code |
| .getFastqString | Source code |
| .getRawSignal | Source code |
| .getRawStartDuration | Source code |
| .getRawSummary | Source code |
| .getReadChannelMux | Source code |
| .getReadChannelMux2 | Source code |
| .getReadNumber | Source code |
| .getRunID | Source code |
| .getSamplingRate | Source code |
| .getStartTime | Source code |
| .groupExistsObj | Source code |
| .groupExistsString | Source code |
| .idFromFASTQ | Source code |
| .matchRecords | Source code |
| .muxToXY | Source code |
| .passFailStatus | Source code |
| .processFastq | Source code |
| .processFastqVec | Source code |
| .processStrandSpecifier | Source code |
| .readAttribute | Source code |
| .readtypeFromFASTQ | Source code |
| .strandExistence | Source code |
| Fast5Summary-class | Man page |
| IONiseR | Man page |
| IONiseR-package | Man page |
| [,Fast5Summary,ANY,ANY,ANY-method | Man page |
| baseCalled | Man page |
| baseCalled,Fast5Summary-method | Man page |
| channelActivityPlot | Man page Source code |
| channelHeatmap | Man page Source code |
| eventData | Man page |
| eventData,Fast5Summary-method | Man page |
| fast5toFastq | Man page Source code |
| fastq | Man page |
| fastq,Fast5Summary-method | Man page |
| fastq2D | Man page |
| fastq2D,Fast5Summary-method | Man page |
| fastqComplement | Man page |
| fastqComplement,Fast5Summary-method | Man page |
| fastqTemplate | Man page |
| fastqTemplate,Fast5Summary-method | Man page |
| layoutPlot | Man page Source code |
| length,Fast5Summary-method | Man page |
| muxHeatmap | Man page Source code |
| plot2DYield | Source code |
| plotActiveChannels | Man page Source code |
| plotBaseProductionRate | Man page Source code |
| plotCurrentByTime | Man page Source code |
| plotEventRate | Man page Source code |
| plotKmerFrequencyCorrelation | Man page Source code |
| plotReadAccumulation | Man page Source code |
| plotReadCategoryCounts | Man page Source code |
| plotReadCategoryQuals | Man page Source code |
| plotReadTypeProduction | Man page Source code |
| readFast5Log | Man page Source code |
| readFast5Summary | Man page Source code |
| readFast5Summary.mc | Source code |
| readInfo | Man page |
| readInfo,Fast5Summary-method | Man page |
