Man pages for grimbough/IONiseR
Quality Assessment Tools for Oxford Nanopore MinION data
| baseCalled | Extract baseCalled slot |
| channelActivityPlot | Visualise a specified metric over all channels over time. |
| channelHeatmap | Create layout plot of flowcell |
| eventData | Extract eventData slot |
| Fast5Summary-class | An S4 class for summarised data from a MinION sequencing run |
| fast5toFastq | Extract FASTQ files from fast5 files |
| fastq | Extract fastq slot |
| fastq2D | Extract 2D reads |
| fastqComplement | Extract complement reads |
| fastqTemplate | Extract template reads |
| IONiseR | IONiseR: A package for assessing quality of MinION data |
| layoutPlot | Create layout plot of flowcell |
| muxHeatmap | Create layout plot of flowcell |
| plotActiveChannels | Plot the number of active channels for each minute of run... |
| plotBaseProductionRate | Plot the mean rate at which bases are recorded |
| plotCurrentByTime | View changes in signal against run time. |
| plotEventRate | Plot the mean rate at which events occur |
| plotKmerFrequencyCorrelation | Display correlation between pentemer proportions in two time... |
| plotReadAccumulation | Plot the accumulation of reads over the duration of the... |
| plotReadCategoryCounts | Plot the proportion of template, complement and 2D reads... |
| plotReadCategoryQuals | Visualise the mean base quality of each read |
| plotReadTypeProduction | View changes in signal against run time. |
| readFast5Log | Read the log entry from a single fast5 file |
| readFast5Summary | Read summary data from fast5 files. |
| readInfo | Extract readInfo slot |
