subSampleBam: Subsample a bam file according to coverage
In gschofl/DR2S: Dual redundant reference sequencing
Description
Usage
Arguments
Value
Description
Subsample a bam file according to coverage
Usage
1
2
subSampleBam(bamfile, windowSize = NULL, sampleSize = 100,
fragmentReads = FALSE, fragmentWidth = 1000, what = NULL)
Arguments
bamfile
The bamfile that will be subsampled
windowSize
The window size for subsampling. The number of reads
precised by sampleSize argument will be sampled in this window.
sampleSize
The desired new coverage of the bamfile.
what
What to extract from the bam file to write to the new one.
If NULL defaults to the complete output of
scanBamWhat.
Value
A list containing the filename of the original bamfile, the name of
the new bamfile, the reference length and the sampleSize
gschofl/DR2S documentation built on May 17, 2019, 8:40 a.m.
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Description Usage Arguments Value
Description
Subsample a bam file according to coverage
Usage
1 2 | subSampleBam(bamfile, windowSize = NULL, sampleSize = 100,
fragmentReads = FALSE, fragmentWidth = 1000, what = NULL)
|
Arguments
bamfile |
The bamfile that will be subsampled |
windowSize |
The window size for subsampling. The number of reads precised by sampleSize argument will be sampled in this window. |
sampleSize |
The desired new coverage of the bamfile. |
what |
What to extract from the bam file to write to the new one.
If NULL defaults to the complete output of
|
Value
A list containing the filename of the original bamfile, the name of the new bamfile, the reference length and the sampleSize
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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