README.md
In guokai8/EnrichR: Functional Enrichment analysis
EnrichR
Functional Enrichment Analysis and Network Construction
PS: EnrichR are not supported any more. Please use the richR("https://www.github.com/guokai8/richR")
Description
EnrichR is a package can be used for functional enrichment analysis and network construction based on enrichment analysis results. It supported almost all species pubished by ENSEMBL and included with Bioconductor. Now the EnrichR provide function to direct download annotation dataset from the MsigDB.
Dependencies
R>2.15
Installation
library(devtools)
install_github("guokai8/EnrichR")
Getting started
library(EnrichR)
More detail please see vignette
vignette("EnrichR")
Some useful commands
If you want tranform ID from one type another type("SYMBOL"->"ENSEMBL")
idconvert(keys=vector_of_symbols,species="human",fkeytype= "SYMBOL",tkeytype="ENSEMBL")
If you want have more details include input data and enrichment results
getdetail(enrichres,input_data)
Contact information
I still working on this package and will add more functions here.
For any questions please contact guokai8@gmail.com
guokai8/EnrichR documentation built on May 18, 2020, 5:29 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
EnrichR
Functional Enrichment Analysis and Network Construction
PS: EnrichR are not supported any more. Please use the richR("https://www.github.com/guokai8/richR")
Description
EnrichR is a package can be used for functional enrichment analysis and network construction based on enrichment analysis results. It supported almost all species pubished by ENSEMBL and included with Bioconductor. Now the EnrichR provide function to direct download annotation dataset from the MsigDB.
Dependencies
R>2.15
Installation
library(devtools)
install_github("guokai8/EnrichR")
Getting started
library(EnrichR)
More detail please see vignette
vignette("EnrichR")
Some useful commands
If you want tranform ID from one type another type("SYMBOL"->"ENSEMBL")
idconvert(keys=vector_of_symbols,species="human",fkeytype= "SYMBOL",tkeytype="ENSEMBL")
If you want have more details include input data and enrichment results
getdetail(enrichres,input_data)
Contact information
I still working on this package and will add more functions here. For any questions please contact guokai8@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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