PE.plant: PFAM Enrichment analysis function based on ensemble plant...
In guokai8/EnrichR: Functional Enrichment analysis

PFAM Enrichment analysis function based on ensemble plant annotation data

PE.plant(
  df,
  PO_FILE,
  gene.cutoff = 0.01,
  padj.method = "BH",
  minSize = 2,
  maxSize = 500,
  keepRich = TRUE,
  filename = NULL,
  cutoff = 0.05
)

`df:`	DGE files (DESeq2 result files) or vector contains gene names
`PO_FILE:`	PFAM annotation data, you can get the data by using makeplantann function
`filename:`	output filename
`gene.cutoff:`	DGE singificant cutoff value