makeplantann: make plant annotation data based on ENSEMBLE

In guokai8/EnrichR: Functional Enrichment analysis

Description

make plant annotation data based on ENSEMBLE

Usage

makeplantann(
  species = "Arabidopsis t",
  host = "plants.ensembl.org",
  ann_type = "GO"
)

Arguments

species	the sepcies you want to search, you can use showplant to get the species name
host	the ensemble API host,for plant you can use plants.ensembl.org and for human and other species you can use uswest.ensembl.org
ann_type	the type of function annotation(GO,KEGG,PFAM,InterPro) you want get from ensemble

Author(s)

Kai Guo

guokai8/EnrichR documentation built on May 18, 2020, 5:29 a.m.