KE.plot: Display KEGG enrichment result

Description Usage Arguments Author(s)

View source: R/KE.R

Description

Display KEGG enrichment result

Usage

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KE.plot(
  resultFis,
  pvalue.cutoff = 0.05,
  top = 50,
  order = FALSE,
  low = "lightpink",
  high = "red",
  alpha = 0.7,
  font.x = "bold",
  font.y = "bold",
  fontsize.x = 10,
  fontsize.y = 10,
  padj.cutoff = NULL,
  usePadj = TRUE,
  filename = NULL,
  width = 10,
  height = 8
)

Arguments

order

order bar or not

low

color used for small value

high

color used for large value

alpha

alpha-transparency scales

fontsize.x

fontsize for x axis

fontsize.y

fontsize for y axis

usePadj

use adjust pvalue or not

filename

output filename

width

width for output file

height

height for output file

resultFis:

KEGG ennrichment analysis result data.frame

top:

Number of Terms you want to display

filename:

output filename

pvalue.cutoff:

the cut-off value for selecting Term

padj.cutoff:

the padj cut-off value for selecting Term

horiz

use horiz or not

Author(s)

Kai Guo


guokai8/EnrichR documentation built on May 18, 2020, 5:29 a.m.