netmap: Plot network of Terms
In guokai8/EnrichR: Functional Enrichment analysis

Plot network of Terms

netmap(
  df,
  rhs,
  top = 50,
  pvalue.cutoff = 0.05,
  padj.cutoff = NULL,
  low = "orange",
  high = "red",
  weightcut = 0.2,
  useTerm = TRUE,
  writeCyt = FALSE,
  cytoscapeFile = "network-file-for-cytoscape.txt",
  vertex.label.font = 2,
  vertex.label.color = "black",
  vertex.label.cex = 0.5,
  layout = layout.fruchterman.reingold,
  visNet = FALSE,
  smooth = TRUE,
  nodeselect = FALSE,
  editvis = FALSE,
  savevis = FALSE,
  savefig = FALSE,
  filename = "network",
  ...
)

`df`	DGE files (DESeq2 result files) or vector contains gene names
`rhs`	Enrichment analsyis result
`top`	number of Terms you want to display
`pvalue.cutoff`	the cut-off P value for selecting significant Terms
`padj.cutoff`	the cut-off P adjust value for selecting significant Terms
`low`	color used for small value
`high`	color used for large value
`weightcut`	the weight cut value for remove edges
`useTerm`	use the Term description or not(defalutTRUE)
`writeCyt`	export file for Cyt software
`vertex.label.color`	color of label(defaultblack)
`vertex.label.cex`	size of label(default0.5)
`layout`	layout format (defultlayout.fruchterman.reingold)
`visNet`	use VisNetwork method to display network(defaultFALSE)
`smooth`	use smooth edge for visNetwork
`nodeselect`	select some interesting node(defaultFALSE)
`editvis`	choose to edit network(defaultFALSE)
`savevis`	save visnetwork to html
`savefig`	save figure to pdf
`filename`	output filename