PE.ensemble: PFAM Enrichment analysis function based on ensemble...
In guokai8/EnrichR: Functional Enrichment analysis
Description
Usage
Arguments
Author(s)
Description
PFAM Enrichment analysis function based on ensemble annotation data
Usage
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PE.ensemble(
df,
PO_FILE,
gene.cutoff = 0.01,
padj.method = "BH",
minSize = 2,
maxSize = 500,
keepRich = TRUE,
filename = NULL,
cutoff = 0.05
)
Arguments
df:
DGE files (DESeq2 result files) or vector contains gene names
PO_FILE:
PFAM annotation data, you can get the data by using makeesanno function
filename:
output filename
gene.cutoff:
DGE singificant cutoff value
Author(s)
Kai Guo
guokai8/EnrichR documentation built on May 18, 2020, 5:29 a.m.
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Description Usage Arguments Author(s)
Description
PFAM Enrichment analysis function based on ensemble annotation data
Usage
1 2 3 4 5 6 7 8 9 10 11 | PE.ensemble(
df,
PO_FILE,
gene.cutoff = 0.01,
padj.method = "BH",
minSize = 2,
maxSize = 500,
keepRich = TRUE,
filename = NULL,
cutoff = 0.05
)
|
Arguments
df: |
DGE files (DESeq2 result files) or vector contains gene names |
PO_FILE: |
PFAM annotation data, you can get the data by using makeesanno function |
filename: |
output filename |
gene.cutoff: |
DGE singificant cutoff value |
Author(s)
Kai Guo
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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