enrich: Enrichment analysis for any type of annotation data

In guokai8/EnrichR: Functional Enrichment analysis

Description

Enrichment analysis for any type of annotation data

Usage

enrich(
  df,
  annot,
  annot.info = NULL,
  minSize = 1,
  maxSize = 500,
  keepRich = TRUE,
  filename = NULL,
  gene.cutoff = 0.01,
  padj.method = "BH"
)

Arguments

df	DGE files (DESeq2 result files) or vector contains gene names
annot	annotation file for all genes
annot.info	Term of all annotation
keepRich	keep terms with high rich factor
filename	output filename
gene.cutoff	DGE singificant cutoff value
padj.method	p value adjust method

Author(s)

Kai Guo

guokai8/EnrichR documentation built on May 18, 2020, 5:29 a.m.