| DE | Disease Ontology Enrichment analysis function |
| dot-getmsig | msigdb support species |
| enrich | Enrichment analysis for any type of annotation data |
| enrichbar | Display enrichment result By using barchart |
| enrichdot | Display enrichment result By using dotchart |
| GE | GO Enrichment analysis function |
| GE.plot | Display GO enrichment result |
| getann | build annotaion for kegg |
| getdetail | Get detail information from enrichment results |
| gnet | Draw network with ggplot2 style |
| GO_child | Get all children terms of node |
| gsea | Enrichment analysis for any type of annotation data |
| hello | Hello, World! |
| idconvert | Convert ID between ENTREZID to SYMBOL or other type ID based... |
| IE.ensemble | InterPro Enrichment analysis function |
| IE.plant | InterPro Enrichment analysis function for plant |
| KE | KEGG Pathway Enrichment analysis function |
| KE.plot | Display KEGG enrichment result |
| lheatmap | Plot compare heatmap of Enrichment result among DEG groups |
| makeesanno | make annotation data except plant based on ENSEMBLE |
| makeGOdata | make GO annotation data function |
| makeKOdata | make KEGG annotation data function |
| makeOwn | make annotation database using bioAnno results |
| makeOwnGO | Make user define annotation data |
| makeplantann | make plant annotation data based on ENSEMBLE |
| makeplantROdata | make Plant Reactome annotation data function |
| makeROdata | make Reactome annotation data function |
| mnetmap | plot combine network of Terms |
| msigdbinfo | Print MSIGDB infomation |
| msigdbr | Download database from Msigdb and prepare for enrichment... |
| netmap | Plot network of Terms |
| PE.ensemble | PFAM Enrichment analysis function based on ensemble... |
| PE.plant | PFAM Enrichment analysis function based on ensemble plant... |
| plotgsea | plot the gsea result |
| rcpp_hello | Hello, Rcpp! |
| RE | Reactome Pathway Enrichment analysis function |
| RE.plant | Reactome Pathway Enrichment analysis function for plant |
| reverseList | reverse List |
| richplot | richplot |
| showAvailableplantsRO | show avaliable plant Reactome annotation data function |
| showAvailableRO | show avaliable Reactome annotation data except plant |
| showData | show avaliable data based on bioconductor annotation package |
| showensemble | Show avaliable annotation except plant based on ENSEMBLE |
| showplant | Show avaliable plant annotation based on ENSEMBLE |
