API for hallucigenia-sparsa/seqtime
Time Series Analysis of Sequencing Data
| Global functions | |
|---|---|
| .onAttach | Source code |
| KLD | Source code |
| addNoise | Man page Source code |
| addNoiseToCommMatrix | Source code |
| analyseTSComparison | Source code |
| analyseTaxaInA | Man page Source code |
| applyPerturbation | Source code |
| assignColorsToGroups | Source code |
| assignTaxonLevelsToA | Man page Source code |
| autocorVsTaxonNum | Man page Source code |
| binByMemory | Man page Source code |
| binaryToPerturb | Man page Source code |
| caporaso_F4FecesL6 | Man page |
| caporaso_F4LPalmL6 | Man page |
| caporaso_F4RPalmL6 | Man page |
| caporaso_F4TongueL6 | Man page |
| caporaso_M3FecesL6 | Man page |
| compareFit | Source code |
| compareTS | Man page Source code |
| computeCentroid | Source code |
| computeMSD | Source code |
| computeMSDCoordinates | Source code |
| computeMSDValueCoordinates | Source code |
| computeNoisetype | Source code |
| computeOandD | Source code |
| countInteractions | Source code |
| countSpecies | Source code |
| customizeGeneratorNames | Source code |
| david_stoolA_metadata | Man page |
| david_stoolA_otus | Man page |
| david_stoolB_metadata | Man page |
| david_stoolB_otus | Man page |
| david_stool_lineages | Man page |
| doc | Man page Source code |
| edges.relink | Source code |
| envGrowthChanges | Man page Source code |
| fill.graph.to.N | Source code |
| filterData | Source code |
| filterTaxonMatrix | Man page Source code |
| firstup | Source code Source code |
| fitDistrib | Source code |
| gKL | Source code |
| generate.parameters | Source code |
| generateA | Man page Source code |
| generateAbundances | Man page Source code |
| generateDataSet | Man page Source code |
| generateRandA | Source code |
| generateSubset | Source code |
| generateTS | Man page Source code |
| get.kld | Source code |
| getAStats | Man page Source code |
| getColorVector | Source code |
| getConnectance | Man page Source code |
| getCrossCorOriPredStepwise | Source code |
| getCrossCorrel | Source code |
| getCrossOriPredFull | Source code |
| getIndicesOfTopNOTUsInProcessedDavidData | Source code |
| getMeanAutoCWR2 | Source code |
| getMeanAutoKLD | Source code |
| getMeanAutocor | Source code |
| getMeanCWR2 | Source code |
| getMeanCrosscor | Source code |
| getMeanKLD | Source code |
| getPPV | Source code |
| getPep | Man page Source code |
| getPerturbedIndices | Source code |
| getProbab | Source code |
| getProcessedDavidData | Source code |
| getSensitivity | Source code |
| getStrength | Source code |
| getTaxonomy | Man page Source code |
| getTransitionProbs | Source code |
| glv | Man page Source code |
| glvsolve | Source code |
| hill | Man page Source code |
| identifyDistrib | Source code |
| identifyDistribs | Source code |
| identifyNoisetypes | Man page Source code |
| interpolate | Man page Source code |
| interpolateSub | Source code |
| is.whole | Source code |
| is.whole.matrix | Source code |
| is.wholenumber | Source code |
| isFullyconnected | Source code |
| klemm.game | Source code |
| limits | Man page Source code |
| limitsQuality | Man page Source code |
| limitscolumnwise | Source code |
| make.full.clique | Source code |
| modifyA | Man page Source code |
| my.pca | Source code |
| noisetypeFromSlope | Source code |
| noisetypes | Man page Source code |
| normalize | Man page Source code |
| ntTaxonLoop | Source code |
| perturbToBinary | Man page Source code |
| perturbation | Man page Source code |
| pielou | Source code |
| plotA | Man page Source code |
| plotAbundanceVsNoisetypes | Man page Source code |
| plotNoisetypes | Man page Source code |
| plotNoisetypesVsHurst | Man page Source code |
| plotTSComparison | Source code |
| powerspec | Man page Source code |
| rJSD | Source code |
| rad | Man page Source code |
| randp | Source code |
| rarefyFilter | Man page Source code |
| rateFunc | Source code |
| reduce_deactive_by_identical | Source code |
| removeLowAbundance | Man page Source code |
| reset.activity.lists | Source code |
| restrictedleastsquare | Source code |
| ricker | Man page Source code |
| run.SOI | Source code |
| seqtime | Man page |
| seqtime-package | Man page |
| sheldon | Man page Source code |
| simCountMat | Man page Source code |
| simCounts | Source code |
| simDecay | Man page Source code |
| simHubbell | Man page Source code |
| simNoiseMat | Man page Source code |
| simUntb | Man page Source code |
| sliceTS | Man page Source code |
| soi | Man page Source code |
| sparse_IAs | Source code |
| sparse_democratic | Source code |
| taylor | Man page Source code |
| testStability | Man page Source code |
| timeDecay | Man page Source code |
| tsDiagnostic | Man page Source code |
| tsJumpStats | Man page Source code |
| tsplot | Man page Source code |
| tsubsample | Man page Source code |
| varEvol | Man page Source code |
