annotate_df | Annotate Dataframe containing Ensembl IDs with Gene Symbols... |
boxplotoutliers | Cel file IDs of intensity boxplot outlier arrays (in... |
chb_utils | chb_utils |
col2rownames | add a column to a dataframe consisting of the current... |
convertIDs | Get other Ids for genes in the same order |
create_report | Create report of QC |
get_biomart | Get biomart annotation from id |
getTFpairs | Get mouse TF-target pairs from opossum database |
ggheatmap | generate a heatmap + dendrograms, ggplot2 style |
ggheatmap.show | Display a ggheatmap |
ggplotDispEsts | Plot Dispersion Estimates - nicer ggplot version of DESeq... |
mds | Plot MDS |
mdsplot.RGset | MDS (MultiDimensional Scaling) Plots |
nuseoutliers | Cel file IDs of intensity NUSE outlier arrays (in... |
PCAplot.cds | Pairwise Principal Component Analysis Plots of CountDataSet... |
PCAplot.eset | Pairwise Principal Component Analysis Plots |
plotDE | Plots the differntially expressed genes on an MA plot, ggplot... |
plot_dendro | ggplot based dendrogram plot |
print_enrichGO | Clean and print results from enrichGO |
qqplot_JH | Plots the pvalue quantiles against the uniform distribution.... |
rleoutliers | Cel file IDs of intensity RLE outlier arrays (in characters). |
row2colnames | add a column to a dataframe consisting of the current... |
runGO | Run GO using clusterprofiler |
variance_by_component | Plot PC importance |
volcano_density_plot | Create volcano plot from log2FC and adjusted pvalues data... |
write_report | Write report of QC |
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