getTFpairs: Get mouse TF-target pairs from opossum database

Description Usage Arguments Value

Description

Get mouse TF-target pairs from opossum database

Usage

1
getTFpairs(listgenes, filesqlite, upstream = 10000, downstream = 0)

Arguments

filesqlite

sqlite file containgin the DB.

upstream

limit distance of the TF to the TSS (upstream to the TSS).

downstream

limit distance of the TF to the TSS (downstream to the TSS).

listgene

vector with ensembl ID genes

Value

data.frame with TF-target pairs


hbc/CHBUtils documentation built on May 17, 2019, 3:07 p.m.