getTFpairs: Get mouse TF-target pairs from opossum database
In hbc/CHBUtils: "Useful utility functions used at the core"
Description
Usage
Arguments
Value
Description
Get mouse TF-target pairs from opossum database
Usage
1
getTFpairs(listgenes, filesqlite, upstream = 10000, downstream = 0)
Arguments
filesqlite
sqlite file containgin the DB.
upstream
limit distance of the TF to the TSS
(upstream to the TSS).
downstream
limit distance of the TF to the TSS
(downstream to the TSS).
listgene
vector with ensembl ID genes
Value
data.frame with TF-target pairs
hbc/CHBUtils documentation built on May 17, 2019, 3:07 p.m.
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Description Usage Arguments Value
Description
Get mouse TF-target pairs from opossum database
Usage
1 | getTFpairs(listgenes, filesqlite, upstream = 10000, downstream = 0)
|
Arguments
filesqlite |
sqlite file containgin the DB. |
upstream |
limit distance of the TF to the TSS (upstream to the TSS). |
downstream |
limit distance of the TF to the TSS (downstream to the TSS). |
listgene |
vector with ensembl ID genes |
Value
data.frame with TF-target pairs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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