annotate_df: Annotate Dataframe containing Ensembl IDs with Gene Symbols...

In hbc/CHBUtils: "Useful utility functions used at the core"

Description

Annotate Dataframe containing Ensembl IDs with Gene Symbols and Descriptions

Usage

annotate_df(df, df_ensemblid_header, biomart_ensembl_dataset,
  biomart_ensemblid_filter, biomart_genesymbol_attribute)

Arguments

df	dataframe, required
df_ensemblid_header,	character string containing the name of the dataframe column with ensembl ids, required
biomart_ensembl_dataset,	character string describing the biomart dataset to use, required
biomart_ensemblid_filter,	character string describing the biomart ensembl id filter to use, required
biomart_genesymbol_attribute,	character string describing the biomart gene symbol attribute to obtain, required

Value

annotated dataframe

See Also

biomaRt used to annotate the dataframe

Examples

annotate_df(temp, "id", 'mmusculus_gene_ensembl', "ensembl_gene_id", "mgi_symbol")

hbc/CHBUtils documentation built on May 17, 2019, 3:07 p.m.