qqplot_JH: Plots the pvalue quantiles against the uniform distribution....
In hbc/CHBUtils: "Useful utility functions used at the core"

Description Usage Arguments Examples

Plots the pvalue quantiles against the uniform distribution. If adjusted pvalues are present, colors those that pass cutoff red

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qqplot_JH(pvaldf, pval_colid = "pval", adj_pval_colid = "padj",
  adj_pval_cutoff = 0.05,
  title = "Quantile-quantile plot of p-values against Uniform distribution")

`pvaldf`	dataframe, required
`pval_colid`	character string, column header of column containing unadjusted pvalues, required
`adj_pval_colid`	character string, column header of column containing adjusted pvalues, required
`adj_pval_cutoff,`	optional, defaults to 0.05
`title,`	optional, defaults to "Quantile-quantile plot of p-values against Uniform distribution"