volcano_density_plot: Create volcano plot from log2FC and adjusted pvalues data...

In hbc/CHBUtils: "Useful utility functions used at the core"

Description

Create volcano plot from log2FC and adjusted pvalues data frame

Usage

volcano_density_plot(stats, side = "both",
  title = "Volcano Plot with Marginal Distributions", pval.cutoff = 0.05,
  lfc.cutoff = 1, shade.colour = "green", shade.alpha = 0.25,
  point.colour = "gray", point.alpha = 0.75,
  point.outline.colour = "darkgray", line.colour = "gray")

Arguments

stats	data.frame with two columns: logFC and Adjusted.Pvalue
side	plot UP, DOWN or BOTH de-regulated points
title	title for the figure
pval.cutoff	cutoff for the adjusted pvalue. Default 0.05
lfc.cutoff	cutoff for the log2FC. Default 1
shade.alpha	transparency value. Default 0.25
point.colour	colours for points. Default gray
point.alpha	transparency for points. Default 0.75
point.outline.colour	Default darkgray
line.colour	Defaul gray

hbc/CHBUtils documentation built on May 17, 2019, 3:07 p.m.