Man pages for hclimente/martini
GWAS Incorporating Networks in R

athalDescription of the athal dataset.
cluster_snpsReturn groups of interconnected SNPs.
evoRun evo.
examplegwasDescription of the examplegwas data.
find_conesFind connected explanatory SNPs.
get_evo_settingsGet evo settings.
get_GI_networkGet GI network.
get_GM_networkGet GM network.
get_GS_networkGet GS network.
get_ldRetrieve LD information from Ensembl
get_ppiGet protein-protein interactions.
get_shake_settingsGet shake settings.
ldweight_edgesInclude LD information in the network.
map2bedConverts a MAP data.frame to a BED data.frame
plot_ideogramIdeogram of shake results.
plot_snp_clusterIdeogram of a SNP cluster.
run_sconesRun shake.
run_shakeRun shake.
search_conesFind connected explanatory SNPs.
simulate_causal_snpsSimulate causal SNPs
simulate_phenotypeSimulate phenotype
snp2geneMap SNPs to genes.
test_cones_clustersCalculate an empirical p-value for 'find_cones' results.
hclimente/martini documentation built on Sept. 23, 2017, 6:06 p.m.