Files in hclimente/martini
GWAS Incorporating Networks
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
Makefile
NAMESPACE
R/NAMESPACE_exports.R
R/RcppExports.R
R/datasets.R
R/db.R
R/ld.R
R/legacy.R
R/networks.R
R/nongwas.R
R/scones.R
R/sigmod.R
R/simulation.R
R/utils.R
R/viz.R
README.md
codecov.yml
configure.ac
data/minigwas.rda
data/minippi.rda
data/minisnpMapping.rda
environment.yml
inst/CITATION
inst/include/martini.h
inst/include/martini_RcppExports.h
man-roxygen/params_X.R
man-roxygen/params_c.R
man-roxygen/params_col_genes.R
man-roxygen/params_covars.R
man-roxygen/params_criterion.R
man-roxygen/params_eta.R
man-roxygen/params_etas.R
man-roxygen/params_family.R
man-roxygen/params_featnames.R
man-roxygen/params_flush.R
man-roxygen/params_genome.R
man-roxygen/params_gwas.R
man-roxygen/params_lambda.R
man-roxygen/params_lambdas.R
man-roxygen/params_link.R
man-roxygen/params_max_prop_snp.R
man-roxygen/params_net.R
man-roxygen/params_organism.R
man-roxygen/params_scones.R
man-roxygen/params_score.R
man-roxygen/params_snpMapping.R
man-roxygen/params_y.R
man-roxygen/reference_azencott.R
man-roxygen/return_cones.R
man/arrange_covars.Rd
man/calculateE.Rd
man/calculateG.Rd
man/check_installed.Rd
man/connect_biomart.Rd
man/get_GI_network.Rd
man/get_GM_network.Rd
man/get_GS_network.Rd
man/get_adjacency.Rd
man/get_grid.Rd
man/get_gxg.Rd
man/get_gxg_biogrid.Rd
man/get_gxg_string.Rd
man/get_snp_modules.Rd
man/group_snps.Rd
man/gwas2bed.Rd
man/is_coherent.Rd
man/ldweight_edges.Rd
man/maxflow.Rd
man/mget_gxg_biogrid.Rd
man/mget_gxg_string.Rd
man/mincut.Rd
man/mincut.cv.Rd
man/mincut_c.Rd
man/minigwas.Rd
man/minippi.Rd
man/minisnpMapping.Rd
man/organism_id2name.Rd
man/permute_snpMatrix.Rd
man/plot_ideogram.Rd
man/sanitize_map.Rd
man/sanitize_snpMapping.Rd
man/scones.Rd
man/scones.cv.Rd
man/scones.cv_.Rd
man/scones_.Rd
man/score_fold.Rd
man/search_cones.Rd
man/sigmod.Rd
man/sigmod.cv.Rd
man/sigmod.cv_.Rd
man/sigmod_.Rd
man/simulate_causal_snps.Rd
man/simulate_phenotype.Rd
man/snp2ensembl.Rd
man/snp_test.Rd
man/subnet.Rd
man/subset_snpMatrix.Rd
man/subvert.Rd
man/wrap_Xy.Rd
src/Makevars
src/Makevars.common
src/Makevars.win
src/RcppExports.cpp
src/lib/maxflow/CHANGES.TXT
src/lib/maxflow/GPL.TXT
src/lib/maxflow/README.TXT
src/lib/maxflow/block.h
src/lib/maxflow/instances.inc
src/lib/maxflow/maxflow.cpp
src/lib/maxflow/maxflow.h
src/mincut.cpp
tests/testthat.R
tests/testthat/examplegwas.rda
tests/testthat/helper_minimum_data.R
tests/testthat/helper_skips.R
tests/testthat/helper_test_data.R
tests/testthat/test_calculateE.R
tests/testthat/test_calculateG.R
tests/testthat/test_check_installed.R
tests/testthat/test_connect_biomart.R
tests/testthat/test_get_GI_network.R
tests/testthat/test_get_GM_network.R
tests/testthat/test_get_GS_network.R
tests/testthat/test_get_grid.R
tests/testthat/test_get_gxg.R
tests/testthat/test_get_gxg_biogrid.R
tests/testthat/test_get_gxg_string.R
tests/testthat/test_get_snp_modules.R
tests/testthat/test_group_snps.R
tests/testthat/test_is_coherent.R
tests/testthat/test_ldweight_edges.R
tests/testthat/test_legacy.R
tests/testthat/test_mincut_c.R
tests/testthat/test_organism_id2name.R
tests/testthat/test_plot_ideogram.R
tests/testthat/test_sanitize_snpMapping.R
tests/testthat/test_scones.R
tests/testthat/test_scones.cv.R
tests/testthat/test_scones.cv_.R
tests/testthat/test_scones_.R
tests/testthat/test_score_fold.R
tests/testthat/test_sigmod.R
tests/testthat/test_sigmod.cv.R
tests/testthat/test_sigmod.cv_.R
tests/testthat/test_sigmod_.R
tests/testthat/test_simulate_causal_snps.R
tests/testthat/test_simulate_phenotype.R
tests/testthat/test_snp2ensembl.R
tests/testthat/test_snp_test.R
tests/testthat/test_subnet.R
tests/testthat/test_subvert.R
tests/testthat/test_wrapXy.R
vignettes/bibliography.bib
vignettes/example_causal_subnetworks.png
vignettes/scones_usage.R
vignettes/scones_usage.Rmd
vignettes/simulate_phenotype.R
vignettes/simulate_phenotype.Rmd
