cones <- scones.cv(test_gwas, test_gm)
modules <- get_snp_modules(test_gwas, cones)
test_that("output has the right dimensions", {
expect_equal(dim(modules), dim(test_gwas[['map']]) + c(0,1))
expect_true("module" %in% colnames(modules))
})
test_that("snp order is kept", {
expect_true(all(modules$snp == cones$snp))
})
test_that("we recover the designated modules", {
expect_equal(unique(modules$module), c(1, NA, 2))
expect_equal(unique(modules$module[grepl("A", modules$snp)]), 1)
expect_equal(unique(modules$module[grepl("C", modules$snp)]), 2)
})
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.