subnet: Subgraph of vertices with an attribute
In hclimente/martini: GWAS Incorporating Networks

subnet

R Documentation

Subgraph of vertices with an attribute

Description

Returns a subgraph matching some condition.

Usage

subnet(net, attr, values, affirmative = TRUE)

Arguments

`net`	An igraph network.
`attr`	An attribute of the vertices.
`values`	Possible values of `attr`.
`affirmative`	Logical. States if a condition must be its affirmation (e.g. all nodes with gene name "X"), or its negation (all nodes not with gene name "X").

Value

A subgraph containing only the vertices with attribute equal to any of the values in values.

Examples

gi <- get_GI_network(minigwas, snpMapping = minisnpMapping, ppi = minippi)
martini:::subnet(gi, "gene", "A")
martini:::subnet(gi, "name", c("1A1", "1A3"))

hclimente/martini documentation built on Feb. 26, 2024, 6:23 p.m.