get_snp_modules: Return groups of interconnected SNPs.
In hclimente/martini: GWAS Incorporating Networks
get_snp_modules R Documentation
Return groups of interconnected SNPs.
Description
Find modules composed by interconnected SNPs.
Usage
get_snp_modules(gwas, net)
Arguments
gwas
A SnpMatrix object with the GWAS information.
net
An igraph network that connects the SNPs.
Value
A list with the modules of selected SNPs.
Examples
## Not run:
gi <- get_GI_network(minigwas, snpMapping = minisnpMapping, ppi = minippi)
cones <- search_cones(minigwas, gi)
martini:::get_snp_modules(cones, gi)
## End(Not run)
hclimente/martini documentation built on Feb. 26, 2024, 6:23 p.m.
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| get_snp_modules | R Documentation |
Return groups of interconnected SNPs.
Description
Find modules composed by interconnected SNPs.
Usage
get_snp_modules(gwas, net)
Arguments
gwas |
A SnpMatrix object with the GWAS information. |
net |
An igraph network that connects the SNPs. |
Value
A list with the modules of selected SNPs.
Examples
## Not run:
gi <- get_GI_network(minigwas, snpMapping = minisnpMapping, ppi = minippi)
cones <- search_cones(minigwas, gi)
martini:::get_snp_modules(cones, gi)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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