organise_marker_genes: Get marker genes from an object of 'SingleCellExperiment'...
In hemberg-lab/SC3: Single-Cell Consensus Clustering
View source: R/ShinyFunctions.R
Description
This functions returns all marker gene columns from the phenoData slot
of the input object corresponding to the number of clusters k. Additionally,
it rearranges genes by the cluster index and order them by the area under the
ROC curve value inside of each cluster.
Usage
1
organise_marker_genes(object, k, p_val, auroc)
Arguments
object
an object of SingleCellExperiment class
k
number of cluster
p_val
p-value threshold
auroc
area under the ROC curve threshold
hemberg-lab/SC3 documentation built on Dec. 18, 2019, 10:02 p.m.
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View source: R/ShinyFunctions.R
Description
This functions returns all marker gene columns from the phenoData slot
of the input object corresponding to the number of clusters k. Additionally,
it rearranges genes by the cluster index and order them by the area under the
ROC curve value inside of each cluster.
Usage
1 | organise_marker_genes(object, k, p_val, auroc)
|
Arguments
object |
an object of |
k |
number of cluster |
p_val |
p-value threshold |
auroc |
area under the ROC curve threshold |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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