sc3_plot_cluster_stability: Plot stability of the clusters
In hemberg-lab/SC3: Single-Cell Consensus Clustering
Description
Stability index shows how stable each cluster is accross the selected
range of ks. The stability index varies between 0 and 1, where 1 means that
the same cluster appears in every solution for different k.
Usage
1
2
3
4
sc3_plot_cluster_stability.SingleCellExperiment(object, k)
## S4 method for signature 'SingleCellExperiment'
sc3_plot_cluster_stability(object, k)
Arguments
object
an object of 'SingleCellExperiment' class
k
number of clusters
hemberg-lab/SC3 documentation built on Dec. 18, 2019, 10:02 p.m.
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Description
Stability index shows how stable each cluster is accross the selected range of ks. The stability index varies between 0 and 1, where 1 means that the same cluster appears in every solution for different k.
Usage
1 2 3 4 | sc3_plot_cluster_stability.SingleCellExperiment(object, k)
## S4 method for signature 'SingleCellExperiment'
sc3_plot_cluster_stability(object, k)
|
Arguments
object |
an object of 'SingleCellExperiment' class |
k |
number of clusters |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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