sc3_kmeans: 'kmeans' clustering of cells.

Description Usage Arguments Value

Description

This function performs kmeans clustering of the matrices contained in the transformations item of the sc3 slot of the metadata(object). It then creates and populates the following items of the sc3 slot:

Usage

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sc3_kmeans.SingleCellExperiment(object, ks)

## S4 method for signature 'SingleCellExperiment'
sc3_kmeans(object, ks = NULL)

Arguments

object

an object of SingleCellExperiment class

ks

a continuous range of integers - the number of clusters k to be used for SC3 clustering. Can also be a single integer.

Value

an object of SingleCellExperiment class


hemberg-lab/SC3 documentation built on May 11, 2018, 4:32 p.m.