sc3_plot_de_genes: Plot expression of DE genes of the clusters identified by...

Description Usage Arguments

Description

SC3 plots gene expression profiles of the 50 genes with the lowest p-values.

Usage

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sc3_plot_de_genes.SingleCellExperiment(object, k, p.val, show_pdata)

## S4 method for signature 'SingleCellExperiment'
sc3_plot_de_genes(object, k, p.val = 0.01,
  show_pdata = NULL)

Arguments

object

an object of 'SingleCellExperiment' class

k

number of clusters

p.val

significance threshold used for the DE genes

show_pdata

a vector of colnames of the pData(object) table. Default is NULL. If not NULL will add pData annotations to the columns of the output matrix


hemberg-lab/SC3 documentation built on Dec. 18, 2019, 10:02 p.m.