sc3_estimate_k: Estimate the optimal number of cluster 'k' for a scRNA-Seq...
In hemberg-lab/SC3: Single-Cell Consensus Clustering
Description
Usage
Arguments
Value
Description
Uses Tracy-Widom theory on random matrices to estimate the optimal number of
clusters k. It creates and populates the k_estimation item of the
sc3 slot of the metadata(object).
Usage
1
2
3
4
sc3_estimate_k.SingleCellExperiment(object)
## S4 method for signature 'SingleCellExperiment'
sc3_estimate_k(object)
Arguments
object
an object of SingleCellExperiment class
Value
an estimated value of k
hemberg-lab/SC3 documentation built on Dec. 18, 2019, 10:02 p.m.
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Description Usage Arguments Value
Description
Uses Tracy-Widom theory on random matrices to estimate the optimal number of
clusters k. It creates and populates the k_estimation item of the
sc3 slot of the metadata(object).
Usage
1 2 3 4 | sc3_estimate_k.SingleCellExperiment(object)
## S4 method for signature 'SingleCellExperiment'
sc3_estimate_k(object)
|
Arguments
object |
an object of |
Value
an estimated value of k
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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