sc3_plot_silhouette: Plot silhouette indexes of the cells

In hemberg-lab/SC3: Single-Cell Consensus Clustering

Description

A silhouette is a quantitative measure of the diagonality of the consensus matrix. An average silhouette width (shown at the bottom left of the silhouette plot) varies from 0 to 1, where 1 represents a perfectly block-diagonal consensus matrix and 0 represents a situation where there is no block-diagonal structure. The best clustering is achieved when the average silhouette width is close to 1.

Usage

sc3_plot_silhouette.SingleCellExperiment(object, k)

## S4 method for signature 'SingleCellExperiment'
sc3_plot_silhouette(object, k)

Arguments

object	an object of 'SingleCellExperiment' class
k	number of clusters

hemberg-lab/SC3 documentation built on Dec. 18, 2019, 10:02 p.m.