Files in hferg/BTprocessR
A set of tools to help with the interpretation and analysis of the output of BayesTraits MCMC analyses.
.Rbuildignore
.gitignore
BTprocessR.Rproj
DESCRIPTION
NAMESPACE
R/BTprocessR_S3.R
R/btSetupFuncs.R
R/compPosts.R
R/getAncStates.R
R/loadPosterior.R
R/marginalLikelhoods.R
R/mcmcPlots.R
R/miscFunctions.R
R/plotShifts.R
R/rjpp.R
R/summariseTrees.R
R/summaryFunctions.R
R/treeStructureFunctions.R
README.Rmd
README.md
README_files/figure-markdown_github/plotPosterior-1.png
README_files/figure-markdown_github/pressure-1.png
data/marsupial_data.rda
data/marsupial_trees.rda
figure/comparePosteriors-1.png
figure/comparePosteriors-2.png
figure/marginalLikelihoods-1.png
figure/plotPosterior-1.png
figure/plotPosterior-2.png
figure/plotPosterior-3.png
figure/plotPosterior-4.png
figure/treePosteriors-1.png
figure/treePosteriors-2.png
inst/extdata/marsupials_brownian.txt.Log.txt
inst/extdata/marsupials_brownian.txt.Stones.txt
inst/extdata/marsupials_variabledelta.txt.Log.txt
inst/extdata/marsupials_variabledelta.txt.Stones.txt
inst/extdata/marsupials_variabledelta.txt.VarRates.txt
inst/extdata/marsupials_variabledeltarate.txt.Log.txt
inst/extdata/marsupials_variabledeltarate.txt.Stones.txt
inst/extdata/marsupials_variabledeltarate.txt.VarRates.txt
inst/extdata/marsupials_vrates.txt.Log.txt
inst/extdata/marsupials_vrates.txt.Stones.txt
inst/extdata/marsupials_vrates.txt.VarRates.txt
man/autoplot.bt_post.Rd
man/autoplot.bt_stones.Rd
man/branchColours.Rd
man/compPosts.Rd
man/createCounts.Rd
man/funLegend.Rd
man/generateTrans.Rd
man/getAncStates.Rd
man/getDescs.Rd
man/getMRCAbtr.Rd
man/getPL.Rd
man/getPostStats.Rd
man/getStones.Rd
man/getTaxa.Rd
man/getTipNames.Rd
man/ggAutoCor.Rd
man/ggHist.Rd
man/ggRunmean.Rd
man/ggTrace.Rd
man/ilapply.Rd
man/isapply.Rd
man/legendInfo.Rd
man/loadPosterior.Rd
man/loadRJ.Rd
man/makeInfile.Rd
man/makeKey.Rd
man/makeLegendTitle.Rd
man/makeTrans.Rd
man/mcmcPlots.Rd
man/modeStat.Rd
man/multiplyNodes.Rd
man/plot.ancstates.Rd
man/plot.bt_post.Rd
man/plot.bt_stones.Rd
man/plot.rjpp.Rd
man/plot.trees_summary.Rd
man/plotPhylo.Rd
man/plotShapes.Rd
man/plotShifts.Rd
man/print.ancstates.Rd
man/print.bt_post.Rd
man/print.rjpp.Rd
man/print.spkey.Rd
man/print.trees_summary.Rd
man/rjpp.Rd
man/scalarSearch.Rd
man/scaleTree.Rd
man/shapeCols.Rd
man/sharedBranches.Rd
man/smartBind.Rd
man/summariseRjpp.Rd
man/summariseTrees.Rd
todo
