API for hjunwoo/ccfindR
Cancer Clone Finder
| Global functions | |
|---|---|
| [,scNMFSet,ANY,ANY,ANY-method | Man page |
| [,scNMFSet-method | Man page |
| assignCelltype | Man page Source code |
| basis | Man page |
| basis,scNMFSet-method | Man page |
| basis<- | Man page |
| basis<-,scNMFSet-method | Man page |
| branch.tree | Source code |
| build_tree | Man page Source code |
| calc_vmr | Source code |
| ccfindR | Man page |
| ccfindR-package | Man page |
| cell_map | Man page Source code |
| cluster_id | Man page Source code |
| coeff | Man page |
| coeff,scNMFSet-method | Man page |
| coeff<- | Man page |
| coeff<-,scNMFSet-method | Man page |
| colData,scNMFSet-method | Man page |
| colData<-,scNMFSet,ANY-method | Man page |
| connectivity | Source code |
| cophenet | Source code |
| counts,scNMFSet-method | Man page |
| counts<-,scNMFSet-method | Man page |
| dbasis | Man page |
| dbasis,scNMFSet-method | Man page |
| dbasis<- | Man page |
| dbasis<-,scNMFSet-method | Man page |
| dcoeff | Man page |
| dcoeff,scNMFSet-method | Man page |
| dcoeff<- | Man page |
| dcoeff<-,scNMFSet-method | Man page |
| dispersion | Source code |
| factorize | Man page Source code |
| feature_map | Man page Source code |
| filter_cells | Man page Source code |
| filter_genes | Man page Source code |
| gene_map | Man page Source code |
| gene_select | Source code |
| gsea | Source code |
| has_mode | Source code |
| hyper_update | Source code |
| init | Source code |
| likelihood | Source code |
| measure | Man page |
| measure,scNMFSet-method | Man page |
| measure<- | Man page |
| measure<-,scNMFSet-method | Man page |
| meta_gene.cv | Man page Source code |
| meta_genes | Man page Source code |
| newick | Man page Source code |
| nmf_updateR | Source code |
| normalize_count | Man page Source code |
| optimal_rank | Man page Source code |
| overlap | Source code |
| plot,scNMFSet,ANY-method | Man page |
| plot_genes | Man page Source code |
| plot_tree | Man page Source code |
| ranks | Man page |
| ranks,scNMFSet-method | Man page |
| ranks<- | Man page |
| ranks<-,scNMFSet-method | Man page |
| read_10x | Man page Source code |
| remove_zeros | Man page Source code |
| rename_tips | Man page Source code |
| rowData,scNMFSet-method | Man page |
| rowData<-,scNMFSet-method | Man page |
| rowVars | Source code |
| scNMFSet | Man page Source code |
| scNMFSet-class | Man page |
| show,scNMFSet-method | Man page |
| simulate_data | Man page Source code |
| simulate_whx | Man page Source code |
| slope | Source code |
| update.tree | Source code |
| vb_factorize | Man page Source code |
| vb_init | Source code |
| vb_iterate | Source code |
| vbnmf_update | Source code |
| vbnmf_updateR | Source code |
| visualize_clusters | Man page Source code |
| write_10x | Man page Source code |
| write_meta | Man page Source code |
