basis-set-scNMFSet-method: Modify basis matrices

In hjunwoo/ccfindR: Cancer Clone Finder

Description

Access and modify basis matrices

Usage

## S4 replacement method for signature 'scNMFSet'
basis(object) <- value

Arguments

object	Object of class scNMFSet
value	Basis matrix to be substituted

Value

Input object with updated basis matrices

Examples

set.seed(1)
s <- scNMFSet(count=matrix(rpois(n=12,lambda=3),4,3))
s <- vb_factorize(s, ranks=3)
basis(s)[[1]] <- apply(basis(s)[[1]],c(1,2),round,digits=3)
basis(s)

hjunwoo/ccfindR documentation built on Oct. 4, 2019, 10:31 a.m.