Files in hjunwoo/ccfindR
Cancer Clone Finder
DESCRIPTION
NAMESPACE
NEWS
R/.Rhistory
R/RcppExports.R
R/bayesian.R
R/ccfindR.R
R/factorize.R
R/gsea.R
R/scNMF_class.R
R/tree.R
R/utils.R
R/utils2.R
README.md
inst/REFERENCES.bib
inst/extdata/barcodes.tsv
inst/extdata/genes.tsv
inst/extdata/matrix.mtx
man/assignCelltype.Rd
man/basis-scNMFSet-method.Rd
man/basis-set-scNMFSet-method.Rd
man/basis-set.Rd
man/basis.Rd
man/build_tree.Rd
man/ccfindR.Rd
man/cell_map.Rd
man/cluster_id.Rd
man/coeff-scNMFSet-method.Rd
man/coeff-set-scNMFSet-method.Rd
man/coeff-set.Rd
man/coeff.Rd
man/colData-scNMFSet-method.Rd
man/colData-set-scNMFSet-ANY-method.Rd
man/counts-scNMFSet-method.Rd
man/counts-set-scNMFSet-method.Rd
man/dbasis-scNMFSet-method.Rd
man/dbasis-set-scNMFSet-method.Rd
man/dbasis-set.Rd
man/dbasis.Rd
man/dcoeff-scNMFSet-method.Rd
man/dcoeff-set-scNMFSet-method.Rd
man/dcoeff-set.Rd
man/dcoeff.Rd
man/factorize.Rd
man/feature_map.Rd
man/filter_cells.Rd
man/filter_genes.Rd
man/gene_map.Rd
man/measure-scNMFSet-method.Rd
man/measure-set-scNMFSet-method.Rd
man/measure-set.Rd
man/measure.Rd
man/meta_gene.cv.Rd
man/meta_genes.Rd
man/newick.Rd
man/normalize_count.Rd
man/optimal_rank.Rd
man/plot_genes.Rd
man/plot_tree.Rd
man/ranks-scNMFSet-method.Rd
man/ranks-set-scNMFSet-method.Rd
man/ranks-set.Rd
man/ranks.Rd
man/read_10x.Rd
man/remove_zeros.Rd
man/rename_tips.Rd
man/rowData-scNMFSet-method.Rd
man/rowData-set-scNMFSet-method.Rd
man/scNMFSet-class.Rd
man/scNMFSet.Rd
man/show-scNMFSet-method.Rd
man/simulate_data.Rd
man/simulate_whx.Rd
man/subset-methods.Rd
man/vb_factorize.Rd
man/visualize_clusters.Rd
man/write_10x.Rd
man/write_meta.Rd
src/Makevars
src/RcppExports.cpp
src/vbnmf_update.cpp
vignettes/ccfindR.Rmd
vignettes/nature.csl
vignettes/scRNA.bib
